TitleAuthorsPublicationDetailsDateYearAccess
Polarization sensitive photothermal mid-infrared spectroscopic imaging of human bone marrow tissueRupali Mankar, Chalapathi Charan Gajjela, Carlos E. Bueso-Ramos, C. Cameron Yin, David Mayerich, and Rohith K. ReddyApplied SpectroscopyMarch2022https://doi.org/10.1177%2F00037028211063513
Prostacyclin promotes degenerative pathology in a model of Alzheimer’s diseaseTasha Womack, Craig Vollert, Odochi Nwoko, Monika Schmitt, Saghi Montazari, Tina Beckett, David Mayerich, Paul Murphy, Jason EriksenFrontiers in Cellular NeuroscienceFebruary2022https://doi.org/10.3389/fncel.2022.769347
Probe the Localized Electrochemical Environment Effects and Electrode Reaction Dynamics for Metal Batteries using In Situ 3D MicroscopyGuangxia Feng, Jiaming Guo, Huajun Tian, Zhao Li, Yaping Shi, David Mayerich, Yang Yang, Xiaonan ShanAdvanced Energy MaterialsDecember2021https://doi.org/10.1002/aenm.202103484
Multimodal high-resolution embryonic imaging with light sheet fluorescence microscopy and optical coherence tomographyBehzad Khajavi, Ruijiao Sun, Harshdeep Singh Chawla, Henry H. Le, Manmohan Singh, Alexander W. Schill, Mary E. Dickinson, David Mayerich, Kirill V. LarinOptics LettersAugust2021https://doi.org/10.1364/OL.430202
Multi-Modal Image Sharpening in Fourier Transform Infrared (FTIR) MicroscopyRupali Mankar, Chalapathi Gajjela, Farideh Foroozandeh, Saurabh Prasad, David Mayerich, Rohith Reddy, Jason Eriksen, Badrinath Roysam, David MayerichAnalystApril2021https://doi.org/10.1039/D1AN00103E
Segmenting Continuous but Sparsely-Labeled Structures in Super-Resolution Microscopy Using Perceptual GroupingJiabing Li, Camille Artur, Jason Eriksen, Badrinath Roysam, David MayerichLecture Notes in Computer Science, Proceedings of the International Conference on Medical Image Computing and Computer-Assisted Intervention12265, 141-150September2020https://doi.org/10.1007/978-3-030-59722-1_14
Artificial intelligence and machine learning in nephropathologyJan U. Becker, David Mayerich, Jonathan Barratt, Peter Boor, Chandra Mohan, Hien V. Nguyen, Badrinath RoysamKidney International9(1):65-75July2020https://doi.org/10.1016/j.kint.2020.02.027https://pubmed.ncbi.nlm.nih.gov/32475607/
Spontaneous Formation of 2D/3D Heterostructures on the Edges of 2D Ruddlesden-Popper Hybrid Perovskite CrystalsZhaojun Qin, Shenyu Dai, Chalapathi Charan Gajjela, Chong Wang, Viktor Hadjiev, Guang Yang, Jiabing Li, Xin Zhong, Zhongjia Tang, Yan Yao, Arnold Guloy, Rohith Reddy, David Mayerich, Liangzi Deng, Qingkai Yu, Guoying Feng, Hector Calderon, Francisco Hernandez, Zhiming Wang, Jiming BaoChemistry of MaterialsMay2020https://doi.org/10.1021/acs.chemmater.0c00419
Photoluminescence Mapping and Time-Domain Thermo-Photoluminescence for Rapid Imaging and Measurement of Thermal Conductivity of Boron ArsenideShuai Yue, Geethal Amila Gamage, Mohammadjavad Mohebinia, David Mayerich, Vishal Talari, Yu Deng, Fei Tian, Shen-Yu Dai, Haoran Sun, Viktor Hadjiev, Wei Zhang, Guoying Geng, Jonathan Hu, Dong Liu, Zhiming Want, Zhifeng Ren, Jiming BaoMaterials Today Physics13:100194February2020https://doi.org/10.1016/j.mtphys.2020.100194
Reconstructing the angiome: a new platform for characterizing disease progression and drug efficacyPavel Govyadinov, Jiaming Guo, Guoning Chen, Jason Eriksen, David MayerichSPIESPIE Photonics WestFebruary2020https://doi.org/10.1021/acs.analchem.9b03015
Automated Osteosclerosis Grading of Clinical Biopsies Using Infrared Spectroscopic ImagingRupali Mankar, Carlos E. Bueso-Ramos, C. Cameron Yin, Juliana Elisa Hidalgo-Lopez, Sebastian Berisha, Mustafa Kansiz, David MayerichAnalytical Chemistry2020https://doi.org/10.1021/acs.analchem.9b03015
Multiplex protein-specific microscopy with ultraviolet surface excitationJiaming Guo, Camille Artur, Tasha Womack, Jason Eriksen, David MayerichBiomedical Optics Express11(1), 99-1082020https://doi.org/10.1364/BOE.11.000099https://www.ncbi.nlm.nih.gov/pubmed/32010503
Three-dimensional macro-scale micro-structure imaging with deep ultraviolet excitationJiaming Guo, Camille Artur, Jason Eriksen, David MayerichSPIESPIE/COS Photonics Asia, Hangzhou, ChinaNovember2019https://doi.org/10.1117/12.2538364
Three-Dimensional Microscopy by Milling with Ultraviolet ExcitationJiaming Guo, Camille Artur, Jason Eriksen, David MayerichNature Scientific Reports251:58:00October2019https://doi.org/10.1038/s41598-019-50870-1
Three-Dimensional GPU-Accelerated Active Contours for Automated Localization of Cells in Large ImagesMahsa Lotfollahi, Sebastian Berisha, Leila Saadatifard, Laura Montier, Jokubas Ziburkus, David MayerichPLoS ONE14(6):e0215843June2019https://doi.org/10.1371/journal.pone.0215843https://www.ncbi.nlm.nih.gov/pubmed/31173591
Digital Staining of High-Definition FTIR Images Using Deep LearningMahsa Lotfollahi, Sebastian Berisha, Davar Daeinejad, David MayerichApplied Spectroscopy73(5):556–564May2019https://www.ncbi.nlm.nih.gov/pubmed/30657342
Robust Tracing and Visualization of Heterogeneous Microvascular NetworksPavel Govyadinov, Tasha Womack, Jason Eriksen, Guoning Chen, David MayerichIEEE Transactions on Visualization and Computer Graphics25(4):1760-1773April2019https://doi.org/10.1109/TVCG.2018.2818701
Accurate flow in augmented networks (AFAN): An approach to generating three-dimensional biomimetic microfluidic networks with controlled flowJiaming Guo, Keely A. Keller, Pavel Govyadinov, Paul Ruchhoeft, John. H. Slater, and David MayerichAnalytical Methods11:8-162019https://doi.org/10.1039/c8ay01798khttps://www.ncbi.nlm.nih.gov/pubmed/31490456
Deep learning for FTIR histology: leveraging spatial and spectral features with convolutional neural networksSebastian Berisha, Mahsa Lotfollahi, Jahandar Jahanipour, Ilker Gurcan, Michael Walsh, Rohit Bhargava, Hien Van Nguyen, and David MayerichAnalyst144:1642-1653February2019https://www.ncbi.nlm.nih.gov/pubmed/30644947
TIMING 2.0: High-throughput single-cell profiling of dynamic cell-cell interactions by time-lapse imaging microscopy in nanowell gidsHengyang Lu, Jiabing Li, Melisa Martinez Paniagua, Irfan Bandey, Amit Amritkar, Harjeet Singh, David Mayerich, Navin Varadarajan, Badrinath RoysamBioinformatics35(4):706-708February2019https://www.ncbi.nlm.nih.gov/pubmed/30084956
Planar Alignment of Graphene Sheets by a Rotating Magnetic Field for Full Exploitation of Graphene as a 2D MaterialFeng Lin, Guang Yang, Chao Niu, Yanan Wang, Zhuan Zhu, Haokun Luo, Chong Dai, Yandi Hu, Xufeng Zhou, Zhaoping Liu, Jonathan Hu, Zhiming Wang, David Mayerich, Jiming BaoAdvanced Functional Materials28(46)November2018
Numerical Methods in Practice: A Programming Guide to Numerical Computing Using C and PythonDavid MayerichUH Alternative Texbook Incentive Programhttps://bitbucket.org/stimlab/numerical-methods/raw/master/book_numerical.pdf
Application of Vibrational Spectroscopy and Imaging to Point-of-Care Medicine: A ReviewSusanne Pahlow, Karina Weber, Jurgen Popp, Bayden R. Wood, Kamila Kochan, Anja Ruther, David Perez-Guaita, Philip Heraud, Nick Stone, Alex Dudgeon, Ben Gardner, Rohith Reddy, David Mayerich, Rohit BhargavaApplied Spectroscopy72(1_suppl):52-842018https://doi.org/10.1177/0003702818791939https://www.ncbi.nlm.nih.gov/pubmed/30265133
Mitigating fringing in discrete-frequency infrared imaging using time-delayed integrationShihao Ran, Sebastian Berisha, Rupali Mankar, Wei-Chuan Shih, David MayerichBiomedical Optics Express9(2):832-8432018https://doi.org/10.1364/BOE.9.000832https://www.ncbi.nlm.nih.gov/pubmed/29552416
Selecting optimal features from Fourier transform infrared spectroscopy for discrete-frequency imagingRupali Mankar, Michael Walsh, Rohit Bhargava, Saurabh Prasad, David MayerichAnalyst143:1147-11562018https://doi.org/10.1039/c7an01888fhttps://www.ncbi.nlm.nih.gov/pubmed/29404544
Plasmonic nanoparticle-based expansion microscopy with surface-enhanced Raman and dark-field spectroscopic imagingCamille Artur, Tasha Womack, Fusheng Zhao, Jason Eriksen, David Mayerich, Wei-Chuan ShihBiomedical Optics Express9(2):603-6152018https://doi.org/10.1364/BOE.9.000603https://www.ncbi.nlm.nih.gov/pubmed/29552397
Comparison and combination of rotational imaging optical coherence tomography and selective plane illumination microscopy for embryonic studyChen Wu, Henry Le, Shihao Ran, Manmohan Singh, Irina V. Larina, David Mayerich, Mary E. Dickinson, Kirill V. LarinBiomedical Optics Express8(10):4629-46392017https://doi.org/10.1364/BOE.8.004629https://www.ncbi.nlm.nih.gov/pubmed/29082090
BIM-Sim: Interactive Simulation of Broadband Imaging Using Mie TheorySebastian Berisha, Thomas van Dijk, Rohit Bhargava, P. Scott Carney, and David MayerichFrontiers in Physics5:5February2017https://doi.org/10.3389/fphy.2017.00005https://www.ncbi.nlm.nih.gov/pubmed/29170738
SIproc: an open-source biomedical data processing platform for large hyperspectral imagesSebastian Berisha, Shengyuan Chang, Sam Saki, Davar Daeinejad, Ziqi He, Rupali Mankar, and David MayerichAnalyst142(8): 1350-1357April2017https://doi.org/10.1039/c6an02082hhttps://www.ncbi.nlm.nih.gov/pubmed/27924319
Image-Guided, Laser-Based Fabrication of Vascular-Derived Microfluidic NetworksKeely Heintz, David Mayerich, and John SlaterJournal of Visualized Experiments(119): e55101January2017https://doi.org/10.3791/55101https://www.ncbi.nlm.nih.gov/pubmed/28117805
A dual-modality optical coherence tomography and selective plane illumination microscopy system for mouse embryonic imagingChen Wu, Shihao Ran, Henry Le, Manmohan Singh, Irina Larina, David Mayerich, Mary Dickinson, and Kirill LarinIEEE39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society2017
Multimodal embryonic imaging using optical coherence tomography, selective plane illumination microscopy, and optical projection tomographyManmohan Singh, Chen Wu, David Mayerich, Mary Dickinson, Irina Larina, and Kirill LarinIEEEIEEE Engineering in Medicine and Biology Society (EMBC)August2016https://doi.org/10.1109/EMBC.2016.7591585https://www.ncbi.nlm.nih.gov/pubmed/28269143
Comparison of rotational imaging optical coherence tomography and selective plane illumination microscopy for embryonic studyChen Wu, Shihao Ran, Henry Le, Manmohan Singh, Irina Larina, David Mayerich, Mary Dickinson, Kirill LarinSPIEProceedings SPIE, Optical Methods in Developmental Biology IVMarch2016
High definition infrared spectroscopic imaging for lymph node histopathologyL. Suzanne Leslie, Tomasz P. Wrobel, David Mayerich, Snehal Bindra, Rajyasree Emmadi, and Rohit BhargavaPLoS ONE10(6): e01272382015https://doi.org/10.1371/journal.pone.0127238https://www.ncbi.nlm.nih.gov/pubmed/26039216
Compositional prior information in computed infrared spectroscopic imagingBradley Deutsch, Rohith Reddy, David Mayerich, Rohit Bhargava, and P. Scott Carney.Journal of the Optical Society of America A32(6):1126-1131May2015https://doi.org/10.1364/JOSAA.32.001126https://www.ncbi.nlm.nih.gov/pubmed/26367047
Stain-less staining for computed histopathologyDavid Mayerich, Michael Walsh, Andre Kadjacsy-Balla, Partha Ray, Stephen Hewitt, and Rohit Bhargava.Technology03(1):27March2015https://doi.org/10.1142/S2339547815200010https://www.ncbi.nlm.nih.gov/pubmed/26029735
On the importance of image formation optics in the design of infrared spectroscopic imaging systemsDavid Mayerich, Thomas van Dijk, Michael Walsh, Matthew Schulmerich, P. Scott Carney, Rohit BhargavaAnalyst139(16): 4031-4036April2014https://doi.org/10.1039/c3an01687khttps://www.ncbi.nlm.nih.gov/pubmed/24936526
Breast histopathology using random decision forests-based classification of infrared spectroscopic imaging dataDavid Mayerich, Michael Walsh, Andre Kadjacsy-Balla, Shachi Mittal, Rohit BhargavaSPIEProceedings of SPIE Medical Imaging 2014: Digital Pathology, 9041(904107)May2015
Real-Time Interactive Data Mining for Chemical Imaging Information: Application to Automated HistopathologyDavid Mayerich, Michael Walsh, Matthew Schulmerich, and Rohit BhargavaBMC Bioinformatics16:36May2013https://doi.org/10.1186/1471-2105-14-156https://www.ncbi.nlm.nih.gov/pubmed/23651487
Rapid Spectral-Domain LocalizationThomas van Dijk, David Mayerich, Rohit Bhargava, and P. Scott CarneyOptics Express21(10):12822-12830May2013https://doi.org/10.1364/OE.21.012822https://www.ncbi.nlm.nih.gov/pubmed/23736501
Recovery of Absorption Spectra from Fourier Transform Infrared Microspectroscopic Measurements of Intact SpheresThomas van Dijk, David Mayerich, P. Scott Carney, and Rohit BhargavaApplied Spectroscopy67(5):546-552April2013https://doi.org/10.1366/12-06847https://www.ncbi.nlm.nih.gov/pubmed/23643044
Volume Visualization in Serial Electron Microscopy Using Local VarianceDavid Mayerich and John HartIEEE BioVispp. 9-16October2012https://doi.org/10.1109/BioVis.2012.6378578
NetMets: Software for Quantifying and Visualizing Errors in Biological Network SegmentationDavid Mayerich, Chris Bjornsson, Jonathan Taylor, and Badrinath RoysamBMC Bioinformatics13(Suppl 8):S7May2012https://doi.org/10.1186/1471-2105-13-S8-S7https://www.ncbi.nlm.nih.gov/pubmed/22607549
Optimizing the Design of FT-IR Spectroscopic Imaging Instruments to Obtain Increased Spatial Resolution of Chemical SpeciesRohith Reddy, David Mayerich, Michael Walsh, Matthew Schulmerich, Paul Scott Carney, Rohit BhargavaIEEE ISBIpp. 354-357May2012https://doi.org/10.1109/ISBI.2012.6235557
Specimen Preparation, Imaging, and Analysis Protocols for Knife-Edge Scanning MicroscopyYoonsuck Choe, David Mayerich, Jaerock Kwon, Daniel Miller, Chul Sung, Ji Ryang Chung, Todd Huffman, John Keyser, Louise AbbottJournal of Visualized Experiments(58), e3248December2011https://doi.org/10.3791/3248http://www.ncbi.nlm.nih.gov/pmc/articles/pmc3369654/
Metrics for Comparing Explicit Representations of Interconnected Biological NetworksDavid Mayerich, Chris Bjornsson, Jonathan Taylor, Badrinath RoysamIEEE BioVispp. 79-86October2011https://doi.org/10.1109/BioVis.2011.6094051
Fast Macro-Scale Imaging of Microvascular Networks Using Transmission KESMDavid Mayerich, Jaerock Kwon, Chul Sung, Louise Abbott, John Keyser, Yoonsuck ChoeBiomedical Optics Express2(10): 2888-2896October2011https://doi.org/10.1364/BOE.2.002888https://www.ncbi.nlm.nih.gov/pubmed/22091443
Multiscale Exploration of Mouse Brain Microstructures Using the Knife-Edge Scanning Microscope Brain AtlasJi Ryang Chung, Chul Sung, David Mayerich, Jaerock Kwon, Daniel Miller, Todd Huffman, John Keyser, Louise Abbott, Yoonsuck ChoeFrontiers in Neuroinformatics5:29November2011https://doi.org/10.3389/fninf.2011.00029https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3254184/
Knife-Edge Scanning Microscopy for Connectomics ResearchYoonsuck Choe, David Mayerich, Jaerock Kwon, Daniel Miller, Ji Ryang Chung, Chul Sung, John Keyser, Louise AbbottIEEE IJCNNpp. 2258-2265July2011https://doi.org/10.1109/IJCNN.2011.6033510
Comparing the MOST Technique to KESMDavid Mayerich, Yoonsuck Choe, John Keyser, Jaerock Kwon, Louise AbbottScience E-LettersApril2011http://www.sciencemag.org/content/330/6009/1404/reply
Automated Cropping and Artifact Removal for Knife-Edge Scanning MicroscopyJaerock Kwon, David Mayerich, Yoonsuck ChoeIEEE ISBIpp. 1366-1369March2011https://doi.org/10.1109/ISBI.2011.5872654
Charting Out the Octopus Connectome at Submicron Resolution Using the Knife-Edge Scanning MicroscopeYoonsuck Choe, Louise Abbott, Giovanna Ponte, John Keyser, Jaerock Kwon, David Mayerich, Daniel Miller, Donghyeop Han, Anna Grimaldi, Graziano Fiorito, David Edelman, Jeffrey McKinstryBMC NeuroscienceJuly2010https://dx.doi.org/10.1186%2F1471-2202-11-S1-P136https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3090839/
Hardware Accelerated Segmentation of Complex Volumetric Filament Networks David Mayerich, John KeyserIEEE Transactions on Visualization and Computer Graphics15(4): 670-681July2009https://doi.org/10.1109/TVCG.2008.196https://www.ncbi.nlm.nih.gov/pubmed/19423890
Visualization of Cellular and Microvascular RelationshipsDavid Mayerich, Louise Abbott, John KeyserIEEE Transactions on Visualization and Computer Graphics / IEEE Visualization14(6): 1611-1618November2008https://doi.org/10.1109/TVCG.2008.179https://www.ncbi.nlm.nih.gov/pubmed/18989017
Knife-Edge Scanning Microscopy for Imaging and Reconstruction of Three-Dimensional Anatomical Structures of the Mouse BrainDavid Mayerich, Louise Abbott, Bruce McCormickJournal of Microscopy231(1): 134-143July2008http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2818.2008.02024.x/full
Automated Lateral Sectioning for Knife-Edge Scanning MicroscopyJaerock Kwon, David Mayerich, Yoonsuck Choe, Bruce McCormickIEEE ISBIMay2008https://doi.org/10.1109/ISBI.2008.4541260
Noise and Artifact Removal in Knife-Edge Scanning MicroscopyDavid Mayerich, Bruce McCormick, John KeyserIEEE ISBIApril2007https://doi.org/10.1109/ISBI.2007.356912
Visualization of Fibrous and Thread-like DataZeki Melek, David Mayerich, Cem Yuksel, John KeyserIEEE Visualization2006https://doi.org/10.1109/TVCG.2006.197https://www.ncbi.nlm.nih.gov/pubmed/17080848