Data Sets

Data sets are provided as BitTorrent Sync (Resilio) keys. The software required to download these data sets is available here: https://www.resilio.com

When possible, we ask that publications using data cite the specified manuscripts to provide details about how the data was acquired. In addition, it is helpful for researchers to keep their downloaded versions of these data sets online, since it increases redundancy and improves the transfer rates of other users.

Data sets are provided under the MIT open-source software license:

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

Knife-Edge Scanning Microscopy

Data Set: Whole mouse brain labeled using India ink perfusion
Processing: Unprocessed
Specifications: 0.6\mu m \times 0.7\mu m \times 1\mu m voxel size
Notes: This data was acquired using Knife-Edge Scanning Microscopy to image sequential coronal sections. The data is raw and appears to be missing a small section of one hemisphere that was outside of the field-of-view of the imaging system during acquisition. This data set is also missing the olfactory bulb, which fell off during brain removal.
Sync key: B276WQ4HRKRE7Q5GP4JPBQLGDVFNS7H3X

Data Set: Whole mouse brain labeled using India ink perfusion
Processing: Unprocessed
Specifications: 0.6\mu m \times 0.7\mu m \times 1\mu m voxel size
Notes: This data was acquired by 3Scan using Knife-Edge Scanning Microscopy to image sequential coronal sections. When using this data, please cite 3Scan (www.3scan.com)
Sync key: B5WSUMJLFFXTCYWRWJ5F6RIQZW2OAAQZL

Data Set: Whole mouse brain labeled using Golgi-Cox diffusion
Processing: Unprocessed
Specifications: 0.6\mu m \times 0.7\mu m \times 1\mu m voxel size
Notes: This data was acquired using Knife-Edge Scanning Microscopy to image sequential horizontal sections.
Sync key: BS224SJ4GZ5EKSFVIQYJRFFIUIEANQR5R

Mid-Infrared Spectroscopic Imaging

Data Set: SIproc tutorial data set
Processing: Unprocessed
Specifications: 5.5\mu m \times 5.5\mu m voxel size imaged at 4cm-1
Notes: This data was acquired using a Perkin-Elmer Spotlight FTIR imaging system with a 0.5NA objective. This data set contains 4 cores designed to be used in a tutorial for the SIproc toolkit.
Sync key: BKQBA3B5MBL2F4GFADUJYVLYYSUSZ7NOR

Data Set: Breast cancer tissue microarray
Processing: Unprocessed
Specifications: 5.5\mu m \times 5.5\mu m voxel size imaged at 4cm-1
Notes: This data was acquired using an Agilent Cary 620 FTIR imaging system with a 0.55NA objective in standard-magnification mode.
Sync key: B276WQ4HRKRE7Q5GP4JPBQLGDVFNS7H3X

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